Software System Guides

CryoSPARC software management guides.

Installing and Updating

Guide: Updating to CryoSPARC v4

Verify Installation, Performance and Troubleshooting

Guide: Installation Testing with cryosparcm testGuide: Verify CryoSPARC Installation with the Extensive Validation Job (v4.3+)Guide: Verify CryoSPARC Installation with the Extensive Workflow (≤v4.2)Guide: Performance Benchmarking (v4.3+)Guide: Download Error Reports

Instance Management

Guide: Maintenance Mode and Configurable User Facing Messages

User Management

Guide: User ManagementGuide: Multi-user Unix Permissions and Data Access ControlGuide: Lane Assignments and Restrictions

Job Queuing

Guide: Queuing Directly to a GPUGuide: Priority Job QueuingGuide: Configuring Custom Variables for Cluster Job Submission Scripts

SSD Caching

Guide: SSD Particle Caching in CryoSPARC

Data Management, Import and Export

Guide: Data Management in CryoSPARC (v4.0+)Guide: Data Cleanup (v4.3+)Guide: Reduce Database Size (v4.3+)Guide: Data Management in CryoSPARC (≤v3.3)Guide: CryoSPARC Live Session Data ManagementGuide: Manipulating .cs Files Created By CryoSPARCGuide: Migrating your CryoSPARC InstanceGuide: EMDB-friendly XML file for FSC plots