# Software System Guides

## Installing and Updating

{% content-ref url="/pages/fDNdMevkXwzDGwZkG4Bn" %}
[Guide: Updating to CryoSPARC v5 (BETA)](/setup-configuration-and-management/software-system-guides/guide-updating-to-cryosparc-v5.md)
{% endcontent-ref %}

{% content-ref url="/pages/GyWjZRmeDkKU1Zn2jWv4" %}
[Guide: Updating to CryoSPARC v4](/setup-configuration-and-management/software-system-guides/guide-updating-to-cryosparc-v4.md)
{% endcontent-ref %}

## Verify Installation, Performance and Troubleshooting

{% content-ref url="/pages/J11jkcODBUNnCrVFVYTr" %}
[Guide: Installation Testing with cryosparcm test](/setup-configuration-and-management/software-system-guides/guide-installation-testing-with-cryosparcm-test.md)
{% endcontent-ref %}

{% content-ref url="/pages/-MNhrOW1ytZ8-U3WkV0r" %}
[Guide: Verify CryoSPARC Installation with the Extensive Validation Job (v4.3+)](/setup-configuration-and-management/software-system-guides/tutorial-verify-cryosparc-installation-with-the-extensive-workflow-sysadmin-guide.md)
{% endcontent-ref %}

{% content-ref url="/pages/MGn7YPrLc7KM4Yyzi7ai" %}
[Guide: Verify CryoSPARC Installation with the Extensive Workflow (≤v4.2)](/setup-configuration-and-management/software-system-guides/tutorial-verify-cryosparc-installation-with-the-extensive-workflow-sysadmin-guide-1.md)
{% endcontent-ref %}

{% content-ref url="/pages/nov71O9rKSgfnnpFqRfs" %}
[Guide: Performance Benchmarking (v4.3+)](/setup-configuration-and-management/software-system-guides/guide-performance-benchmarking-v4.3.md)
{% endcontent-ref %}

{% content-ref url="/pages/TSuhnNBKoO8zPqocYGrn" %}
[Guide: Download Error Reports](/setup-configuration-and-management/software-system-guides/guide-download-error-reports.md)
{% endcontent-ref %}

## Instance Management

{% content-ref url="/pages/ExdUPe4xFh3gYepmHpCq" %}
[Guide: Maintenance Mode and Configurable User Facing Messages](/setup-configuration-and-management/software-system-guides/guide-maintenance-mode-and-configurable-user-facing-messages.md)
{% endcontent-ref %}

## User Management

{% content-ref url="/pages/-MNecrUQzW1CYEnJCepj" %}
[Guide: User Management](/setup-configuration-and-management/software-system-guides/tutorial-user-management.md)
{% endcontent-ref %}

{% content-ref url="/pages/-MckPoLFT9SUA459kEcN" %}
[Guide: Multi-user Unix Permissions and Data Access Control](/setup-configuration-and-management/software-system-guides/unix-permissions-and-data-access-control.md)
{% endcontent-ref %}

{% content-ref url="/pages/CJFjwLOpeqI6r91Mxkob" %}
[Guide: Lane Assignments and Restrictions](/setup-configuration-and-management/software-system-guides/guide-lane-assignments-and-restrictions.md)
{% endcontent-ref %}

## Job Queuing

{% content-ref url="/pages/-MNf1QrDa0ZRSzwp75Vz" %}
[Guide: Priority Job Queuing](/setup-configuration-and-management/software-system-guides/tutorial-priority-job-queuing.md)
{% endcontent-ref %}

{% content-ref url="/pages/5zikU1RIs7uHyIpgV96G" %}
[Guide: Configuring Custom Variables for Cluster Job Submission Scripts](/setup-configuration-and-management/software-system-guides/guide-configuring-custom-variables-for-cluster-job-submission-scripts.md)
{% endcontent-ref %}

## SSD Caching

{% content-ref url="/pages/-MNeFvdldyAikdOWQ4K3" %}
[Guide: SSD Particle Caching in CryoSPARC](/setup-configuration-and-management/software-system-guides/tutorial-ssd-particle-caching-in-cryosparc.md)
{% endcontent-ref %}

## Data Management, Import and Export

{% content-ref url="/pages/F3KBgDxkuaoVRFwpV0KW" %}
[Guide: Data Management in CryoSPARC (v4.0+)](/setup-configuration-and-management/software-system-guides/guide-data-management-in-cryosparc-v4.0.md)
{% endcontent-ref %}

{% content-ref url="/pages/Sgc4uptcwUJhNnXMk6v9" %}
[Guide: Data Cleanup (v4.3+)](/setup-configuration-and-management/software-system-guides/guide-data-cleanup-v4.3.md)
{% endcontent-ref %}

{% content-ref url="/pages/1LzAjuvhV2nWupJX9Gmd" %}
[Guide: Reduce Database Size (v4.3+)](/setup-configuration-and-management/software-system-guides/guide-reduce-database-size-v4.3.md)
{% endcontent-ref %}

{% content-ref url="/pages/-MNexr5lrR2HBCuP4qWS" %}
[Guide: CryoSPARC Live Session Data Management (≤v4.7)](/setup-configuration-and-management/software-system-guides/cryosparc-live-session-data-management-4.7.md)
{% endcontent-ref %}

{% content-ref url="/pages/kkC48tlWZTekJEslJFbr" %}
[Guide: Instance Recovery (v5.0+)](/setup-configuration-and-management/software-system-guides/guide-instance-recovery-v5.0.md)
{% endcontent-ref %}

{% content-ref url="/pages/-MNeMxOeXMsIWu8jTuYb" %}
[Guide: Migrating your CryoSPARC Instance](/setup-configuration-and-management/software-system-guides/tutorial-migrating-your-cryosparc-instance.md)
{% endcontent-ref %}


---

# Agent Instructions: Querying This Documentation

If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter:

```
GET https://guide.cryosparc.com/setup-configuration-and-management/software-system-guides.md?ask=<question>
```

The question should be specific, self-contained, and written in natural language.
The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.