CryoSPARC Guide
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CryoSPARC Guide
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About CryoSPARC
Current Version
Licensing
Setup, Configuration and Management
CryoSPARC Architecture and System Requirements
CryoSPARC Installation Prerequisites
How to Download, Install and Configure
Deploying CryoSPARC on AWS
Using CryoSPARC with Cluster Management Software
Software Updates and Patches
Management and Monitoring
Software System Guides
Guide: Updating to CryoSPARC v4
Guide: Installation Testing with cryosparcm test
Guide: Verify CryoSPARC Installation with the Extensive Validation Job (v4.3+)
Guide: Verify CryoSPARC Installation with the Extensive Workflow (≤v4.2)
Guide: Performance Benchmarking (v4.3+)
Guide: Cluster Integration Validation
Guide: Download Error Reports
Guide: Maintenance Mode and Configurable User Facing Messages
Guide: User Management
Guide: Multi-user Unix Permissions and Data Access Control
Guide: Lane Assignments and Restrictions
Guide: Queuing Directly to a GPU
Guide: Priority Job Queuing
Guide: Configuring Custom Variables for Cluster Job Submission Scripts
Guide: SSD Particle Caching in CryoSPARC
Guide: Data Management in CryoSPARC (v4.0+)
Guide: Data Cleanup (v4.3+)
Guide: Reduce Database Size (v4.3+)
Guide: Data Management in CryoSPARC (≤v3.3)
Guide: CryoSPARC Live Session Data Management
Guide: Manipulating .cs Files Created By CryoSPARC
Guide: Migrating your CryoSPARC Instance
Guide: EMDB-friendly XML file for FSC plots
Troubleshooting
Application Guide (v4.0+)
A Tour of the CryoSPARC Interface
Using the CryoSPARC Interface
Creating and Running Jobs
Workflows
Blueprints
Inspecting Data
Managing Jobs
Interactive Jobs
Managing Data
Downloading and Exporting Data
Instance Management
Admin Panel
Application Guide (≤v3.3)
User Interface and Usage Guide
Processing Data in cryoSPARC
Get Started with CryoSPARC: Introductory Tutorial (v4.0+)
Get Started with CryoSPARC: Introductory Tutorial (≤v3.3)
Tutorial Videos
All Job Types in CryoSPARC
CryoSPARC Tools
Data Processing Tutorials
Webinar Recordings
Real-time processing in cryoSPARC Live
About CryoSPARC Live
Prerequisites and Compute Resources Setup
How to Access cryoSPARC Live
UI Overview
New Live Session: Start to Finish Guide
CryoSPARC Live Tutorial Videos
Live Jobs and Session-Level Functions
Performance Metrics
Managing a CryoSPARC Live Session from the CLI
FAQs and Troubleshooting
Cryo-EM Data Processing Explained
Questions and Support
cryoSPARC Discussion Forum
cryoSPARC Blog
cryoSPARC Homepage
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Software System Guides
CryoSPARC software management guides.
Installing and Updating
Guide: Updating to CryoSPARC v4
Verify Installation, Performance and Troubleshooting
Guide: Installation Testing with cryosparcm test
Guide: Verify CryoSPARC Installation with the Extensive Validation Job (v4.3+)
Guide: Verify CryoSPARC Installation with the Extensive Workflow (≤v4.2)
Guide: Performance Benchmarking (v4.3+)
Guide: Cluster Integration Validation
Guide: Download Error Reports
Instance Management
Guide: Maintenance Mode and Configurable User Facing Messages
User Management
Guide: User Management
Guide: Multi-user Unix Permissions and Data Access Control
Guide: Lane Assignments and Restrictions
Job Queuing
Guide: Queuing Directly to a GPU
Guide: Priority Job Queuing
Guide: Configuring Custom Variables for Cluster Job Submission Scripts
SSD Caching
Guide: SSD Particle Caching in CryoSPARC
Data Management, Import and Export
Guide: Data Management in CryoSPARC (v4.0+)
Guide: Data Cleanup (v4.3+)
Guide: Reduce Database Size (v4.3+)
Guide: Data Management in CryoSPARC (≤v3.3)
Guide: CryoSPARC Live Session Data Management
Guide: Manipulating .cs Files Created By CryoSPARC
Guide: Migrating your CryoSPARC Instance
Guide: EMDB-friendly XML file for FSC plots
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