> For the complete documentation index, see [llms.txt](https://guide.cryosparc.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://guide.cryosparc.com/setup-configuration-and-management/software-system-guides.md).

# Software System Guides

## Installing and Updating

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[Guide: Updating to CryoSPARC v5](/setup-configuration-and-management/software-system-guides/guide-updating-to-cryosparc-v5.md)
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[Guide: Updating to CryoSPARC v4](/setup-configuration-and-management/software-system-guides/guide-updating-to-cryosparc-v4.md)
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## Verify Installation, Performance and Troubleshooting

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[Guide: Installation Testing with cryosparcm test](/setup-configuration-and-management/software-system-guides/guide-installation-testing-with-cryosparcm-test.md)
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[Guide: Verify CryoSPARC Installation with the Extensive Validation Job (v4.3+)](/setup-configuration-and-management/software-system-guides/tutorial-verify-cryosparc-installation-with-the-extensive-workflow-sysadmin-guide.md)
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[Guide: Verify CryoSPARC Installation with the Extensive Workflow (≤v4.2)](/setup-configuration-and-management/software-system-guides/tutorial-verify-cryosparc-installation-with-the-extensive-workflow-sysadmin-guide-1.md)
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[Guide: Performance Benchmarking (v4.3+)](/setup-configuration-and-management/software-system-guides/guide-performance-benchmarking-v4.3.md)
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[Guide: Download Error Reports](/setup-configuration-and-management/software-system-guides/guide-download-error-reports.md)
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## Instance Management

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[Guide: Maintenance Mode and Configurable User Facing Messages](/setup-configuration-and-management/software-system-guides/guide-maintenance-mode-and-configurable-user-facing-messages.md)
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## User Management

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[Guide: User Management](/setup-configuration-and-management/software-system-guides/tutorial-user-management.md)
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[Guide: Multi-user Unix Permissions and Data Access Control](/setup-configuration-and-management/software-system-guides/unix-permissions-and-data-access-control.md)
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[Guide: Lane Assignments and Restrictions](/setup-configuration-and-management/software-system-guides/guide-lane-assignments-and-restrictions.md)
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## Job Queuing

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[Guide: Priority Job Queuing](/setup-configuration-and-management/software-system-guides/tutorial-priority-job-queuing.md)
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[Guide: Configuring Custom Variables for Cluster Job Submission Scripts](/setup-configuration-and-management/software-system-guides/guide-configuring-custom-variables-for-cluster-job-submission-scripts.md)
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## SSD Caching

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[Guide: SSD Particle Caching in CryoSPARC](/setup-configuration-and-management/software-system-guides/tutorial-ssd-particle-caching-in-cryosparc.md)
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## Data Management, Import and Export

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[Guide: Data Management in CryoSPARC (v4.0+)](/setup-configuration-and-management/software-system-guides/guide-data-management-in-cryosparc-v4.0.md)
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[Guide: Data Cleanup (v4.3+)](/setup-configuration-and-management/software-system-guides/guide-data-cleanup-v4.3.md)
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[Guide: Reduce Database Size (v4.3+)](/setup-configuration-and-management/software-system-guides/guide-reduce-database-size-v4.3.md)
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[Guide: CryoSPARC Live Session Data Management (≤v4.7)](/setup-configuration-and-management/software-system-guides/cryosparc-live-session-data-management-4.7.md)
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{% content-ref url="/pages/kkC48tlWZTekJEslJFbr" %}
[Guide: Instance Recovery (v5.0+)](/setup-configuration-and-management/software-system-guides/guide-instance-recovery-v5.0.md)
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[Guide: Migrating your CryoSPARC Instance](/setup-configuration-and-management/software-system-guides/tutorial-migrating-your-cryosparc-instance.md)
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