Management and Monitoring (≤v4.7)

Instructions for accessing and working in the CryoSPARC command line.

This page refers to CryoSPARC ≤v4.7.

For v5.0+, please see https://github.com/cryoem-uoft/guide-beta/blob/master/setup-configuration-and-management/management-and-monitoring-v5.0

Environment variables

Specify additional environment variables in the configuration files to augment CryoSPARC's low-level behaviour.

Environment variables (≤v4.7)

cryosparcm, cryosparcm cli and cryosparcw references

Workstations or master nodes with a cryosparc_master installation have access to cryosparcm, CryoSPARC's built-in command-line utility for all administrative, management and advanced usage tasks.

cryosparcm reference (≤v4.7)

The cryosparcm cli command provides an extensive API for programmatically controlling cryoSPARC from the command-line.

cryosparcm cli reference (≤v4.7)

Workstations or worker nodes with a cryosparc_worker installation have access to cryosparcw, a utility similar to cryosparcm for managing worker installations.

cryosparcw reference (≤v4.7)