CryoSPARC Guide
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CryoSPARC Guide
  • About CryoSPARC™
  • Changelogarrow-up-right
  • Licensing
  • Setup, Configuration and Management
    • CryoSPARC Architecture and System Requirements
    • CryoSPARC Installation Prerequisites
    • How to Download, Install and Configure
    • Software Updates and Patches
    • Management and Monitoring (≤v4.7)
    • Management and Monitoring (v5.0+)
    • Software System Guides
    • Deploying CryoSPARC on AWS
    • Troubleshooting
  • Application Guide
    • A Tour of the CryoSPARC Interface
    • Browsing the CryoSPARC Instance
    • Projects, Workspaces and Live Sessions
    • Jobs
    • Job Views: Cards, Tree, and Table
    • Creating and Running Jobs
    • Inspecting Job Data
    • Low Level Results Interface
    • Filters and Sorting
    • View Options
    • Tags
    • Flat vs Hierarchical Navigation
    • File Browser
    • Blueprints
    • Workflows
    • Managing Jobs
    • Interactive Jobs
    • Upload Local Files
    • Managing Data
    • Downloading and Exporting Data
    • Instance Management
    • Admin Panel
    • Keyboard Shortcuts
  • Cryo-EM Foundations
    • Image Formation
  • Expectation Maximization in Cryo-EM
  • Processing Data in cryoSPARC
    • Get Started with CryoSPARC: Introductory Tutorial (v4.0+)
    • Tutorial Videos
    • All Job Types in CryoSPARC
      • Import
      • Motion Correction
      • CTF Estimation
      • Exposure Curation
      • Particle Picking
      • Extraction
      • Deep Picking
      • Particle Curation
      • 3D Reconstruction
      • 3D Refinement
      • CTF Refinement
      • Conformational Variability
      • Postprocessing
      • Local Refinement
      • Helical Reconstruction
      • Utilities
      • Simulations
    • Automated Workflows
    • CryoSPARC Tools
    • Data Processing Tutorials
    • Webinar Recordings
  • Real-time processing in cryoSPARC Live
    • About CryoSPARC Live
    • Prerequisites and Compute Resources Setup
    • How to Access CryoSPARC Live
    • UI Overview
    • New Live Session: Start to Finish Guide
    • CryoSPARC Live Tutorial Videos
    • Live Jobs and Session-Level Functions
    • Performance Metrics
    • Managing a CryoSPARC Live Session from the CLI (≤v4.7)
    • Managing a CryoSPARC Live Session from the CLI (v5.0+)
    • FAQs and Troubleshooting
  • Guides for v3
    • v3 User Interface Guide
    • Tutorial: Job Builder
    • Get Started with CryoSPARC: Introductory Tutorial (v3)
    • Tutorial: Manually Curate Exposures (v3)
    • Guide: Data Management in CryoSPARC (≤v3.3)
  • Resources
    • Questions and Support
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  1. Processing Data in cryoSPARC

All Job Types in CryoSPARC

Details on all of the available job types in CryoSPARC, when to use them, required inputs, parameter explanations, and common next steps.

Importchevron-rightMotion Correctionchevron-rightCTF Estimationchevron-rightExposure Curationchevron-rightParticle Pickingchevron-rightExtractionchevron-rightDeep Pickingchevron-rightParticle Curationchevron-right3D Reconstructionchevron-right3D Refinementchevron-rightCTF Refinementchevron-rightConformational Variabilitychevron-rightPostprocessingchevron-rightLocal Refinementchevron-rightHelical Reconstructionchevron-rightUtilitieschevron-rightSimulationschevron-right
PreviousTutorial Videoschevron-leftNextImportchevron-right

Last updated 1 month ago