CryoSPARC Guide
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  • About CryoSPARC
  • Current Version
  • Licensing
  • Setup, Configuration and Management
    • CryoSPARC Architecture and System Requirements
    • CryoSPARC Installation Prerequisites
    • How to Download, Install and Configure
    • Deploying CryoSPARC on AWS
    • Using CryoSPARC with Cluster Management Software
    • Software Updates and Patches
    • Management and Monitoring
    • Software System Guides
    • Troubleshooting
  • Application Guide (v4.0+)
    • A Tour of the CryoSPARC Interface
    • Browsing the CryoSPARC Instance
    • Projects, Workspaces and Live Sessions
    • Jobs
    • Job Views: Cards, Tree, and Table
    • Creating and Running Jobs
    • Low Level Results Interface
    • Filters and Sorting
    • View Options
    • Tags
    • Flat vs Hierarchical Navigation
    • File Browser
    • Blueprints
    • Workflows
    • Inspecting Data
    • Managing Jobs
    • Interactive Jobs
    • Upload Local Files
    • Managing Data
    • Downloading and Exporting Data
    • Instance Management
    • Admin Panel
  • Cryo-EM Foundations
    • Image Formation
  • Expectation Maximization in Cryo-EM
  • Processing Data in cryoSPARC
    • Get Started with CryoSPARC: Introductory Tutorial (v4.0+)
    • Tutorial Videos
    • All Job Types in CryoSPARC
      • Import
      • Motion Correction
      • CTF Estimation
      • Exposure Curation
      • Particle Picking
      • Extraction
      • Deep Picking
      • Particle Curation
      • 3D Reconstruction
      • 3D Refinement
      • CTF Refinement
      • Conformational Variability
      • Postprocessing
      • Local Refinement
      • Helical Reconstruction
      • Utilities
      • Simulations
    • Automated Workflows
    • CryoSPARC Tools
    • Data Processing Tutorials
    • Webinar Recordings
  • Real-time processing in cryoSPARC Live
    • About CryoSPARC Live
    • Prerequisites and Compute Resources Setup
    • How to Access CryoSPARC Live
    • UI Overview
    • New Live Session: Start to Finish Guide
    • CryoSPARC Live Tutorial Videos
    • Live Jobs and Session-Level Functions
    • Performance Metrics
    • Managing a CryoSPARC Live Session from the CLI
    • FAQs and Troubleshooting
  • Guides for v3
    • v3 User Interface Guide
    • Tutorial: Job Builder
    • Get Started with CryoSPARC: Introductory Tutorial (v3)
    • Tutorial: Manually Curate Exposures (v3)
  • Resources
    • Questions and Support
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  1. Processing Data in cryoSPARC

All Job Types in CryoSPARC

Details on all of the available job types in CryoSPARC, when to use them, required inputs, parameter explanations, and common next steps.

ImportMotion CorrectionCTF EstimationExposure CurationParticle PickingExtractionDeep PickingParticle Curation3D Reconstruction3D RefinementCTF RefinementConformational VariabilityPostprocessingLocal RefinementHelical ReconstructionUtilitiesSimulations
PreviousTutorial VideosNextImport

Last updated 1 year ago