CryoSPARC Guide
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CryoSPARC Guide
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About CryoSPARC
Current Version
Licensing
Setup, Configuration and Management
CryoSPARC Architecture and System Requirements
CryoSPARC Installation Prerequisites
How to Download, Install and Configure
Deploying CryoSPARC on AWS
Using CryoSPARC with Cluster Management Software
Software Updates and Patches
Management and Monitoring
Software System Guides
Troubleshooting
Application Guide (v4.0+)
A Tour of the CryoSPARC Interface
Using the CryoSPARC Interface
Creating and Running Jobs
Inspecting Data
Managing Jobs
Interactive Jobs
Managing Data
Downloading and Exporting Data
Instance Management
Admin Panel
Application Guide (≤v3.3)
User Interface and Usage Guide
Processing Data in cryoSPARC
Get Started with CryoSPARC: Introductory Tutorial (v4.0+)
Get Started with CryoSPARC: Introductory Tutorial (≤v3.3)
Tutorial Videos
All Job Types in CryoSPARC
Import
Motion Correction
CTF Estimation
Exposure Curation
Particle Picking
Extraction
Job: Extract from Micrographs
Job: Downsample Particles
Job: Restack Particles
Deep Picking
Particle Curation
3D Reconstruction
3D Refinement
CTF Refinement
Conformational Variability
Postprocessing
Local Refinement
Helical Reconstruction
Utilities
Simulations
CryoSPARC Tools
Data Processing Tutorials
Webinar Recordings
Real-time processing in cryoSPARC Live
About CryoSPARC Live
Prerequisites and Compute Resources Setup
How to Access cryoSPARC Live
UI Overview
New Live Session: Start to Finish Guide
CryoSPARC Live Tutorial Videos
Live Jobs and Session-Level Functions
Performance Metrics
Managing a CryoSPARC Live Session from the CLI
FAQs and Troubleshooting
Cryo-EM Data Processing Explained
Questions and Support
cryoSPARC Discussion Forum
cryoSPARC Blog
cryoSPARC Homepage
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Extraction
Extracting picked particles from micrographs and related utilities.
Job: Extract from Micrographs
Job: Downsample Particles
Job: Restack Particles
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Job: Create Templates
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Job: Extract from Micrographs
Last modified
2mo ago
