CryoSPARC Guide
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CryoSPARC Guide
  • About CryoSPARC™
  • Changelogarrow-up-right
  • Licensing
  • Setup, Configuration and Management
    • CryoSPARC Architecture and System Requirements
    • CryoSPARC Installation Prerequisites
    • How to Download, Install and Configure
    • Software Updates and Patches
    • Management and Monitoring (≤v4.7)
    • Management and Monitoring (v5.0+)
    • Software System Guides
    • Deploying CryoSPARC on AWS
    • Troubleshooting
  • Application Guide (v4.0+)
    • A Tour of the CryoSPARC Interface
    • Browsing the CryoSPARC Instance
    • Projects, Workspaces and Live Sessions
    • Jobs
    • Job Views: Cards, Tree, and Table
    • Creating and Running Jobs
    • Inspecting Job Data
    • Low Level Results Interface
    • Filters and Sorting
    • View Options
    • Tags
    • Flat vs Hierarchical Navigation
    • File Browser
    • Blueprints
    • Workflows
    • Managing Jobs
    • Interactive Jobs
    • Upload Local Files
    • Managing Data
    • Downloading and Exporting Data
    • Instance Management
    • Admin Panel
    • Keyboard Shortcuts
  • Cryo-EM Foundations
    • Image Formation
  • Expectation Maximization in Cryo-EM
  • Processing Data in cryoSPARC
    • Get Started with CryoSPARC: Introductory Tutorial (v4.0+)
    • Tutorial Videos
    • All Job Types in CryoSPARC
      • Import
      • Motion Correction
      • CTF Estimation
      • Exposure Curation
      • Particle Picking
      • Extraction
        • Job: Extract from Micrographs
        • Job: Downsample Particles
        • Job: Restack Particles
      • Deep Picking
      • Particle Curation
      • 3D Reconstruction
      • 3D Refinement
      • CTF Refinement
      • Conformational Variability
      • Postprocessing
      • Local Refinement
      • Helical Reconstruction
      • Utilities
      • Simulations
    • Automated Workflows
    • CryoSPARC Tools
    • Data Processing Tutorials
    • Webinar Recordings
  • Real-time processing in cryoSPARC Live
    • About CryoSPARC Live
    • Prerequisites and Compute Resources Setup
    • How to Access CryoSPARC Live
    • UI Overview
    • New Live Session: Start to Finish Guide
    • CryoSPARC Live Tutorial Videos
    • Live Jobs and Session-Level Functions
    • Performance Metrics
    • Managing a CryoSPARC Live Session from the CLI (≤v4.7)
    • Managing a CryoSPARC Live Session from the CLI (v5.0+)
    • FAQs and Troubleshooting
  • Guides for v3
    • v3 User Interface Guide
    • Tutorial: Job Builder
    • Get Started with CryoSPARC: Introductory Tutorial (v3)
    • Tutorial: Manually Curate Exposures (v3)
  • Resources
    • Questions and Support
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  1. Processing Data in cryoSPARCchevron-right
  2. All Job Types in CryoSPARC

Extraction

Extracting picked particles from micrographs and related utilities.

Job: Extract from Micrographschevron-rightJob: Downsample Particleschevron-rightJob: Restack Particleschevron-right
PreviousJob: Create Templateschevron-leftNextJob: Extract from Micrographschevron-right

Last updated 1 year ago