CryoSPARC Guide
Search…
⌃K

Using CryoSPARC with Cluster Management Software

A collection of links to documentation on using CryoSPARC with cluster management software.
This page is a collection of links to documentation on using CryoSPARC with cluster management software. We recommend reviewing all the relevant information under Setup, Configuration and Management before proceeding with installing and configuring CryoSPARC.

Typical CryoSPARC System Setups

Review the Architecture and System Requirements for typical system setups, including clusters:

Supported Cluster Schedulers

CryoSPARC supports most cluster schedulers, including SLURM, SGE and PBS. Please see here for more details:

CryoSPARC Cluster Integration Script Examples

We provide examples of cluster integration scripts which can be adapted as required:
It is also possible to use custom values in cluster submission scripts, before a job is queued:

Connecting a Cluster During Installation

Review the below sections of the Download and Installation procedure for connecting a cluster during installation, updating a cluster configuration, and adding additional cluster lanes.

Cluster Integration Validation

How to validate the configuration of a cluster lane and monitor job status: