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Job: Exposure Group Utilities

Exposure group utilities for combining or splitting exposure or particle datasets.

Description

  • Combine or split your exposure or particle datasets into exposure groups.

Input

  • Particles
    • ctf (required)
    • location (optional)
    • blob (optional)
  • Exposures
    • ctf (required)
    • blob [movie/micrograph] (optional)
    • mscope_params (optional)

Output

  • Input Dataset [particle/exposure] Combined (default)
  • Input Dataset [particle/exposure] Split by Exposure Groups (optional)

Common Parameters

  • Input Selection: Specifies which input group to use
  • Action: Specifies which mode to use
    • info_only: Prints a table listing information about the dataset's exposure group stats
    • combine&set: Allows combining of multiple exposure inputs and set them to a single exposure group
    • split: Allows use of a path field to split the datasets into unique exposure groups
    • test_token: When splitting a dataset into exposure groups, this option allows you to test your "token creation" method
  • Field to use to split Dataset: Used only in mode split - indicates which file path field to use to create unique tokens to split the dataset into different exposure groups
  • Starting Exposure Group ID: Used only in mode split - indicates the starting ID that each exposure group will increment from
  • Token Creation Strategy: The strategy used to create the tokens that will split the dataset into unique exposure groups.
    • string_slice: Uses character positions to slice the filepath into unique tokens
    • string_split: Uses a separator to split the file path into groups, of which one can be selected
    • regular_expression: Uses python's re.search() to evaluate a regular expression against each filename, creating subgroups, one of which can be selected to create unique tokens
      • As of v4.0.2, all filepaths that do not match the provided regular expression will be assigned to a separate exposure group ID.
  • Start Slice Index: Used only in mode split/string_slice - indicates the number of characters from the Index Position to start the slice
  • Number of characters to Consider: Used only in mode split/string_slice - indicates the number of characters from the start position to slice to create the tokens out of the file paths
  • Index Position: Used only in mode split/string_slice- indicates which position of the file path to index from
  • File path separator: Used only in mode split/string_split- indicates the separator to use to split the filepath into individual groups
  • Split Group Index: Used only in modes split/string_split or split/regular_expression- indicates the group to select when splitting the filename into groups
  • Regular Expression String: Used only in mode split/regular_expression- indicates the regular expression to evaluate against each file path using python's re.search()
    • As of v4.0.2, all filepaths that do not match the provided regular expression will be assigned to a separate exposure group ID.
  • Set Exposure Group Value: Used only in mode combine&set- indicates the exposure group ID to set for this dataset
  • Combine Strategy: Specifies which mode to use when finding conflicting CTF values across the exposure group
    • fail: throws an exception if inconsistent CTF values are found
    • take median: overwrites the CTF values of each exposure group with the median of the CTF values across the exposure group
  • Split Outputs by Exposure Group: Specifies whether to output the dataset by each individual exposure group
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Conformational Variability
Last modified 11mo ago