Job: Exposure Group Utilities
Exposure group utilities for combining or splitting exposure or particle datasets.
- Combine or split your exposure or particle datasets into exposure groups.
- Particles
ctf
(required)location
(optional)blob
(optional)
- Exposures
ctf
(required)blob
[movie/micrograph]
(optional)mscope_params
(optional)
- Input Dataset
[particle/exposure]
Combined (default) - Input Dataset
[particle/exposure]
Split by Exposure Groups (optional)
Input Selection
: Specifies which input group to useAction
: Specifies which mode to useinfo_only
: Prints a table listing information about the dataset's exposure group statscombine&set
: Allows combining of multiple exposure inputs and set them to a single exposure groupsplit
: Allows use of a path field to split the datasets into unique exposure groupstest_token
: When splitting a dataset into exposure groups, this option allows you to test your "token creation" method
Field to use to split Dataset
: Used only in modesplit
- indicates which file path field to use to create unique tokens to split the dataset into different exposure groupsStarting Exposure Group ID
: Used only in modesplit
- indicates the starting ID that each exposure group will increment fromToken Creation Strategy
: The strategy used to create the tokens that will split the dataset into unique exposure groups.string_slice
: Uses character positions to slice the filepath into unique tokensstring_split
: Uses a separator to split the file path into groups, of which one can be selectedregular_expression
: Uses python's re.search() to evaluate a regular expression against each filename, creating subgroups, one of which can be selected to create unique tokens- As of v4.0.2, all filepaths that do not match the provided regular expression will be assigned to a separate exposure group ID.
Start Slice Index
: Used only in modesplit/string_slice
- indicates the number of characters from theIndex Position
to start the sliceNumber of characters to Consider
: Used only in modesplit/string_slice
- indicates the number of characters from the start position to slice to create the tokens out of the file pathsIndex Position
: Used only in modesplit/string_slice
- indicates which position of the file path to index fromFile path separator
: Used only in modesplit/string_split
- indicates the separator to use to split the filepath into individual groupsSplit Group Index
: Used only in modessplit/string_split
orsplit/regular_expression
- indicates the group to select when splitting the filename into groupsRegular Expression String
: Used only in modesplit/regular_expression
- indicates the regular expression to evaluate against each file path using python's re.search()- As of v4.0.2, all filepaths that do not match the provided regular expression will be assigned to a separate exposure group ID.
Set Exposure Group Value
: Used only in modecombine&set
- indicates the exposure group ID to set for this datasetCombine Strategy
: Specifies which mode to use when finding conflicting CTF values across the exposure groupfail
: throws an exception if inconsistent CTF values are foundtake median
: overwrites the CTF values of each exposure group with the median of the CTF values across the exposure group
Split Outputs by Exposure Group
: Specifies whether to output the dataset by each individual exposure group
Last modified 11mo ago